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cellxgene-census

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

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Install

armory install cellxgene-census --cli claude

writes the skill into.claude/skills/cellxgene-census/SKILL.mdListed as compatible

Configuration
# fetches the source and writes it to:
.claude/skills/cellxgene-census/SKILL.md

Needs the armory CLI · not on npm yet, build it from cli/ in the repository

What it is

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

When to use it

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

How to install / invoke

# Copy the skill into your .claude/skills/ directory
curl -sL https://raw.githubusercontent.com/davila7/claude-code-templates/main/cli-tool/components/skills/scientific/cellxgene-census/SKILL.md -o .claude/skills/cellxgene-census/SKILL.md

Notes

Extracted from davila7/claude-code-templates, cellxgene-census category.