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scanpy

Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

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Install

armory install scanpy --cli claude

writes the skill into.claude/skills/scanpy/SKILL.mdListed as compatible

Configuration
# fetches the source and writes it to:
.claude/skills/scanpy/SKILL.md

Needs the armory CLI · not on npm yet, build it from cli/ in the repository

What it is

Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

When to use it

Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

How to install / invoke

# Copy the skill into your .claude/skills/ directory
curl -sL https://raw.githubusercontent.com/davila7/claude-code-templates/main/cli-tool/components/skills/scientific/scanpy/SKILL.md -o .claude/skills/scanpy/SKILL.md

Notes

Extracted from davila7/claude-code-templates, scanpy category.