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Scored on public signals; components with none are listed as Unranked · Formula

RankScoreComponentDescriptionEvidenceLast commitInstall
1Unrankedagent-introspection-debuggingskill · ai-agentsStructured self-debugging workflow for AI agent failures using capture, diagnosis, contained recovery, and introspection reports.No signals yetNo commit datelisted armory install agent-introspection-debugging --cli claude
2Unrankedanndataskill · otherThis skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental…No signals yetNo commit datelisted armory install anndata --cli claude
3Unrankedbiomniskill · ai-agentsAutonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical…No signals yetNo commit datelisted armory install biomni --cli claude
4Unrankedclinicaltrials-databaseskill · back-endQuery ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for…No signals yetNo commit datelisted armory install clinicaltrials-database --cli claude
5Unrankedclinpgx-databaseskill · databaseAccess ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine…No signals yetNo commit datelisted armory install clinpgx-database --cli claude
6Unrankedclinvar-databaseskill · back-endQuery NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or…No signals yetNo commit datelisted armory install clinvar-database --cli claude
7Unrankeddnanexus-integrationskill · otherDNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics…No signals yetNo commit datelisted armory install dnanexus-integration --cli claude
8Unrankeddrugbank-databaseskill · databaseAccess and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical…No signals yetNo commit datelisted armory install drugbank-database --cli claude
9Unrankedena-databaseskill · back-endAccess European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and…No signals yetNo commit datelisted armory install ena-database --cli claude
10Unrankedensembl-databaseskill · back-endQuery Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP…No signals yetNo commit datelisted armory install ensembl-database --cli claude
11Unrankederror-resolverskill · observabilitySystematic error diagnosis and resolution using first-principle analysis. Use when encountering any error message, stack trace, or unexpected…No signals yetNo commit datelisted armory install error-resolver --cli claude
12Unrankedetetoolkitskill · otherPhylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization…No signals yetNo commit datelisted armory install etetoolkit --cli claude
13Unrankedgeo-databaseskill · back-endAccess NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for…No signals yetNo commit datelisted armory install geo-database --cli claude
14Unrankedgtarsskill · otherHigh-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage…No signals yetNo commit datelisted armory install gtars --cli claude
15Unrankedhealthcare-cdss-patternsskill · otherClinical Decision Support System (CDSS) development patterns. Drug interaction checking, dose validation, clinical scoring (NEWS2, qSOFA), alert…No signals yetNo commit datelisted armory install healthcare-cdss-patterns --cli claude
16Unrankedhealthcare-emr-patternsskill · front-endEMR/EHR development patterns for healthcare applications. Clinical safety, encounter workflows, prescription generation, clinical decision support…No signals yetNo commit datelisted armory install healthcare-emr-patterns --cli claude
17Unrankedhealthcare-eval-harnessskill · devopsPatient safety evaluation harness for healthcare application deployments. Automated test suites for CDSS accuracy, PHI exposure, clinical workflow…No signals yetNo commit datelisted armory install healthcare-eval-harness --cli claude
18Unrankedhipaa-complianceskill · otherHIPAA-specific entrypoint for healthcare privacy and security work. Use when a task is explicitly framed around HIPAA, PHI handling, covered entities…No signals yetNo commit datelisted armory install hipaa-compliance --cli claude
19Unrankedliterature-reviewskill · observabilitySystematic literature-review workflow for academic, biomedical, technical, and scientific topics, including search planning, source screening…No signals yetNo commit datelisted armory install literature-review --cli claude
20Unrankedpubmed-databaseskill · searchDirect PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed…No signals yetNo commit datelisted armory install pubmed-database --cli claude
21Unrankedpydicomskill · otherPython library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying…No signals yetNo commit datelisted armory install pydicom --cli claude
22Unrankedpyhealthskill · devopsComprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when…No signals yetNo commit datelisted armory install pyhealth --cli claude
23Unrankedrisk-management-specialistskill · otherSenior Risk Management specialist for medical device companies implementing ISO 14971 risk management throughout product lifecycle. Provides risk…No signals yetNo commit datelisted armory install risk-management-specialist --cli claude
24Unrankedtorchdrugskill · otherGraph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation…No signals yetNo commit datelisted armory install torchdrug --cli claude
25Unrankedtreatment-plansskill · otherGenerate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment…No signals yetNo commit datelisted armory install treatment-plans --cli claude

Score colour shows how many signals stand behind it, never how good it is: amber, three or more; dimmer amber, two; grey, one. The Evidence column names them.

Stars, forks and last commit are as GitHub reported them when Armory last read each repository: for most, or later. A repository may have changed since.

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